PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.AMK8R
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 153aa    MW: 17732.3 Da    PI: 10.1501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.AMK8RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000345678123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C k F ++  L  H++ H
  Aradu.AMK8R 56 FPCKFCYKKFASSQALGGHQNAH 78
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-65383No hitNo description
Gene3DG3DSA:3.30.160.602.4E-45482IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.0E-55680IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0115683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSNMLKRKLE EEQPIMDNNN NNNNNPELLL TLSLNLERVD EPSSNMENRP KQQRLFPCKF  60
CYKKFASSQA LGGHQNAHKR ERMLSRMNKV FNMGAIDLGP RHFCPYSNMS NHLIPFRGSF  120
PVYHQGAHMH HMVHMPSSTL TMPFPRFGSN FGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943816.11e-110PREDICTED: zinc finger protein 4-like
TrEMBLA0A151SZ652e-30A0A151SZ65_CAJCA; Zinc finger protein 3
STRINGGLYMA02G22110.14e-26(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-16C2H2 family protein